All functions
|
WSS()
|
Well sampled sites model |
createWeights()
|
Create frescalo weights file |
dataDiagnostics()
|
Data Diagnostics |
date2timeperiod()
|
Assign dates to time periods |
formatOccData()
|
Format data for Occupancy detection models |
frescalo()
|
Frescalo trend analysis |
gps_latlon2gr()
|
Covert latitude and longitude to other formats |
gr2gps_latlon()
|
Covert grid reference to latitude and longitude |
occDetFunc()
|
Occupancy detection Function |
occDetModel()
|
Occupancy detection models |
plot_GIS()
|
Plot GIS shape files |
recsOverTime()
|
Histogram of records over time |
reportingRateModel()
|
Run Reporting Rate Models |
siteSelection()
|
Site selection method |
siteSelectionMinL()
|
List-length site selection |
siteSelectionMinTP()
|
Minimum time-period site selection |
sparta
|
sparta Trend Analysis for Unstructured Data |
telfer()
|
Telfer's change index |
unicorns
|
A fictional dataset of unicorn sightings |
occurrenceChange()
|
Calculate percentage change between two years using Bayesian output |
htmlSummary()
|
Create HTML Report |
plot(<occDet>)
|
Plot occDet Objects |
getBugsData()
|
Modify the bugs data object depending on the type of model you are running |
getInitValues()
|
Modify the init object depending on the type of model we are running |
getModelFile()
|
Create a sparta JAGS model file fitting your needs |
getObsModel()
|
Create the observation model component of a sparta JAGS model |
getParameters()
|
Modify the initial values object depending on the type of model we are running |
detection_phenology()
|
Diagnostics for the detectability with respect to Julian Date |
simOccData()
|
Simulate for Occupancy detection models |