Modify the bugs data object depending on the type of model you are running

This function is primarily for internal use within occDetFunc. It is used to update the bugs data according to the needs of each model type.

Usage

getBugsData(bugs_data, modeltype, verbose = FALSE, occDetData)

bugs_data: The bugs data object. This is a list specified in occDetFunc as list(y = as.numeric(focal), Year = TP, Site = rownum, nyear = nTP, nsite = nrow(zst), nvisit = nrow(occDetdata[i,])). Where focal is a binary (0/1) of is the focal species is present, Year is the time periods or survey periods, Site are the site identifiers, nyear is the number of years in the data, nsite is hte number of sites and nVisit is the number of visits
modeltype: Character, one of: intercept, centering, jul_date, catlistlength, contlistlength. See occDetFunc for more information.
verbose: Logical, if true progress is reported to the console
occDetData: The 'raw' data used to create the bugs_data. This should have a column 'L' for list length and a column 'JulDate' for Julian date

An updated bugs_data object